Add pipeline mutation commands to REPL

- Add help text for add_stage, remove_stage, swap_stages, move_stage commands
- Implement _cmd_add_stage, _cmd_remove_stage, _cmd_swap_stages, _cmd_move_stage methods
- Update _handle_pipeline_mutation in main.py and pipeline_runner.py
- Fix fragile test by testing output buffer directly instead of rendered output

engine/effects/plugins/repl.py

@@ -249,6 +249,14 @@ class ReplEffect(EffectPlugin):
                 self._cmd_param(cmd_args, ctx)
             elif cmd_name == "pipeline":
                 self._cmd_pipeline(ctx)
+            elif cmd_name == "add_stage":
+                self._cmd_add_stage(cmd_args)
+            elif cmd_name == "remove_stage":
+                self._cmd_remove_stage(cmd_args)
+            elif cmd_name == "swap_stages":
+                self._cmd_swap_stages(cmd_args)
+            elif cmd_name == "move_stage":
+                self._cmd_move_stage(cmd_args)
             elif cmd_name == "clear":
                 self.state.output_buffer.clear()
             elif cmd_name == "quit" or cmd_name == "exit":
@@ -271,6 +279,12 @@ class ReplEffect(EffectPlugin):
             "  param <effect> <param> <value> - Set parameter"
         )
         self.state.output_buffer.append("  pipeline - Show current pipeline order")
+        self.state.output_buffer.append("  add_stage <name> <type> - Add new stage")
+        self.state.output_buffer.append("  remove_stage <name> - Remove stage")
+        self.state.output_buffer.append("  swap_stages <name1> <name2> - Swap stages")
+        self.state.output_buffer.append(
+            "  move_stage <name> [after <stage>] [before <stage>] - Move stage"
+        )
         self.state.output_buffer.append("  clear - Clear output buffer")
         self.state.output_buffer.append("  quit - Show exit message")
 
@@ -366,6 +380,103 @@ class ReplEffect(EffectPlugin):
         else:
             self.state.output_buffer.append("No context available")
 
+    def _cmd_add_stage(self, args: list[str]):
+        """Add a new stage to the pipeline."""
+        if len(args) < 2:
+            self.state.output_buffer.append("Usage: add_stage <name> <type>")
+            return
+
+        stage_name = args[0]
+        stage_type = args[1]
+        self.state.output_buffer.append(
+            f"Adding stage '{stage_name}' of type '{stage_type}'"
+        )
+
+        # Store command for external handling
+        self._pending_command = {
+            "action": "add_stage",
+            "stage": stage_name,
+            "stage_type": stage_type,
+        }
+
+    def _cmd_remove_stage(self, args: list[str]):
+        """Remove a stage from the pipeline."""
+        if len(args) < 1:
+            self.state.output_buffer.append("Usage: remove_stage <name>")
+            return
+
+        stage_name = args[0]
+        self.state.output_buffer.append(f"Removing stage '{stage_name}'")
+
+        # Store command for external handling
+        self._pending_command = {
+            "action": "remove_stage",
+            "stage": stage_name,
+        }
+
+    def _cmd_swap_stages(self, args: list[str]):
+        """Swap two stages in the pipeline."""
+        if len(args) < 2:
+            self.state.output_buffer.append("Usage: swap_stages <name1> <name2>")
+            return
+
+        stage1 = args[0]
+        stage2 = args[1]
+        self.state.output_buffer.append(f"Swapping stages '{stage1}' and '{stage2}'")
+
+        # Store command for external handling
+        self._pending_command = {
+            "action": "swap_stages",
+            "stage1": stage1,
+            "stage2": stage2,
+        }
+
+    def _cmd_move_stage(self, args: list[str]):
+        """Move a stage in the pipeline."""
+        if len(args) < 1:
+            self.state.output_buffer.append(
+                "Usage: move_stage <name> [after <stage>] [before <stage>]"
+            )
+            return
+
+        stage_name = args[0]
+        after = None
+        before = None
+
+        # Parse optional after/before arguments
+        i = 1
+        while i < len(args):
+            if args[i] == "after" and i + 1 < len(args):
+                after = args[i + 1]
+                i += 2
+            elif args[i] == "before" and i + 1 < len(args):
+                before = args[i + 1]
+                i += 2
+            else:
+                i += 1
+
+        if after:
+            self.state.output_buffer.append(
+                f"Moving stage '{stage_name}' after '{after}'"
+            )
+        elif before:
+            self.state.output_buffer.append(
+                f"Moving stage '{stage_name}' before '{before}'"
+            )
+        else:
+            self.state.output_buffer.append(
+                "Usage: move_stage <name> [after <stage>] [before <stage>]"
+            )
+            return
+
+        # Store command for external handling
+        self._pending_command = {
+            "action": "move_stage",
+            "stage": stage_name,
+            "after": after,
+            "before": before,
+        }
+
     def get_pending_command(self) -> dict | None:
         """Get and clear pending command for external handling."""
         cmd = getattr(self, "_pending_command", None)